Changes
On October 25, 2024 at 2:17:20 PM UTC, Edoardo Luca Vigano:
-
Changed value of field
size
to48929458
in hERG inhibition leading to cardiac toxicity -
Added resource hERG_channels_inhibitors_dataset_CDDD.csv to hERG inhibition leading to cardiac toxicity
f | 1 | { | f | 1 | { |
2 | "age_type": [], | 2 | "age_type": [], | ||
3 | "author": "Edoardo Luca Vigan\u00f2", | 3 | "author": "Edoardo Luca Vigan\u00f2", | ||
4 | "author_email": "edoardo.vigano@marionegri.it", | 4 | "author_email": "edoardo.vigano@marionegri.it", | ||
5 | "category": [], | 5 | "category": [], | ||
6 | "cells_number": "", | 6 | "cells_number": "", | ||
7 | "content": [], | 7 | "content": [], | ||
8 | "creator_user_id": "56153fff-4293-4f39-9723-fcc904de812a", | 8 | "creator_user_id": "56153fff-4293-4f39-9723-fcc904de812a", | ||
9 | "culture_medium": [], | 9 | "culture_medium": [], | ||
10 | "dimension": [], | 10 | "dimension": [], | ||
11 | "experiment_date": "", | 11 | "experiment_date": "", | ||
12 | "groups": [], | 12 | "groups": [], | ||
13 | "id": "40fa2e07-8a2d-46d9-b0ec-3600f7bf391d", | 13 | "id": "40fa2e07-8a2d-46d9-b0ec-3600f7bf391d", | ||
14 | "isopen": false, | 14 | "isopen": false, | ||
15 | "license_id": "notspecified", | 15 | "license_id": "notspecified", | ||
16 | "license_title": "License not specified", | 16 | "license_title": "License not specified", | ||
17 | "maintainer": "", | 17 | "maintainer": "", | ||
18 | "maintainer_email": "", | 18 | "maintainer_email": "", | ||
19 | "metadata_created": "2024-10-25T14:15:45.385922", | 19 | "metadata_created": "2024-10-25T14:15:45.385922", | ||
n | 20 | "metadata_modified": "2024-10-25T14:15:45.385928", | n | 20 | "metadata_modified": "2024-10-25T14:17:20.371459", |
21 | "model": [], | 21 | "model": [], | ||
22 | "name": "herg-inhibition-leading-to-cardiac-toxicity", | 22 | "name": "herg-inhibition-leading-to-cardiac-toxicity", | ||
23 | "notes": "hERG channel blockade leading to sudden cardiac | 23 | "notes": "hERG channel blockade leading to sudden cardiac | ||
24 | death\r\n\r\nIncreased mortality triggered by drug-mediated blockade | 24 | death\r\n\r\nIncreased mortality triggered by drug-mediated blockade | ||
25 | of human ether-a-gogo-related gene (hERG) channel. The inhibition of | 25 | of human ether-a-gogo-related gene (hERG) channel. The inhibition of | ||
26 | rapid delayed rectifying potassium current, prolongation of action | 26 | rapid delayed rectifying potassium current, prolongation of action | ||
27 | potential duration, prolongation of QT interval, and Torsades de | 27 | potential duration, prolongation of QT interval, and Torsades de | ||
28 | Pointes. Overall, all these steps indicate that there has been a | 28 | Pointes. Overall, all these steps indicate that there has been a | ||
29 | disruption in cardiac electrophysiology, leading to sudden cardiac | 29 | disruption in cardiac electrophysiology, leading to sudden cardiac | ||
30 | death on an individual level.\r\n\r\nData: ID (ChEMBL240) assigned to | 30 | death on an individual level.\r\n\r\nData: ID (ChEMBL240) assigned to | ||
31 | the hERG channel. To ensure data validity, the database was mined | 31 | the hERG channel. To ensure data validity, the database was mined | ||
32 | retaining only those entries matching the following criteria already | 32 | retaining only those entries matching the following criteria already | ||
33 | suggested in the literature: \r\n1) annotated exclusively with IC50 | 33 | suggested in the literature: \r\n1) annotated exclusively with IC50 | ||
34 | (11,144 entries) measures, \r\n2) referring to assays conducted on | 34 | (11,144 entries) measures, \r\n2) referring to assays conducted on | ||
35 | human targets (\u201ctarget_organism\u201d = \u201cHomo | 35 | human targets (\u201ctarget_organism\u201d = \u201cHomo | ||
36 | sapiens\u201d), \r\n3) marked as direct binding | 36 | sapiens\u201d), \r\n3) marked as direct binding | ||
37 | (\u201cassay_type\u201d = \u201cB\u201d), and 4) free of warnings in | 37 | (\u201cassay_type\u201d = \u201cB\u201d), and 4) free of warnings in | ||
38 | the \u201cdata_validity_comment\u201d field\r\n\r\nAOP source: | 38 | the \u201cdata_validity_comment\u201d field\r\n\r\nAOP source: | ||
39 | https://aopwiki.org/aops/433\r\nData source: | 39 | https://aopwiki.org/aops/433\r\nData source: | ||
40 | https://www.ebi.ac.uk/chembl/\r\nData curation: | 40 | https://www.ebi.ac.uk/chembl/\r\nData curation: | ||
41 | 10.3389/fphar.2022.951083", | 41 | 10.3389/fphar.2022.951083", | ||
n | 42 | "num_resources": 0, | n | 42 | "num_resources": 1, |
43 | "num_tags": 2, | 43 | "num_tags": 2, | ||
44 | "organization": { | 44 | "organization": { | ||
45 | "approval_status": "approved", | 45 | "approval_status": "approved", | ||
46 | "created": "2023-03-17T17:42:44.917090", | 46 | "created": "2023-03-17T17:42:44.917090", | ||
47 | "description": "The Mario Negri Institute for Pharmacological | 47 | "description": "The Mario Negri Institute for Pharmacological | ||
48 | Research (www.marionegri.it) is a not-for-profit | 48 | Research (www.marionegri.it) is a not-for-profit | ||
49 | biomedical\r\nresearch organization.\r\nIt was established in Milan in | 49 | biomedical\r\nresearch organization.\r\nIt was established in Milan in | ||
50 | 1961 and later (1984) opened research units in Bergamo, currently | 50 | 1961 and later (1984) opened research units in Bergamo, currently | ||
51 | located at the\r\nKilometro Rosso Science and Technology Park, and | 51 | located at the\r\nKilometro Rosso Science and Technology Park, and | ||
52 | Ranica (near Bergamo)", | 52 | Ranica (near Bergamo)", | ||
53 | "id": "e50db934-20d8-4a27-80a2-ce67bc4d99db", | 53 | "id": "e50db934-20d8-4a27-80a2-ce67bc4d99db", | ||
54 | "image_url": "2023-03-17-174244.890524IMNOrizzontaleRGB.png", | 54 | "image_url": "2023-03-17-174244.890524IMNOrizzontaleRGB.png", | ||
55 | "is_organization": true, | 55 | "is_organization": true, | ||
56 | "name": "irfmn", | 56 | "name": "irfmn", | ||
57 | "state": "active", | 57 | "state": "active", | ||
58 | "title": "IRFMN", | 58 | "title": "IRFMN", | ||
59 | "type": "organization" | 59 | "type": "organization" | ||
60 | }, | 60 | }, | ||
61 | "owner_org": "e50db934-20d8-4a27-80a2-ce67bc4d99db", | 61 | "owner_org": "e50db934-20d8-4a27-80a2-ce67bc4d99db", | ||
62 | "private": false, | 62 | "private": false, | ||
63 | "ratio_hipsccms_hcaecs": "", | 63 | "ratio_hipsccms_hcaecs": "", | ||
64 | "relationships_as_object": [], | 64 | "relationships_as_object": [], | ||
65 | "relationships_as_subject": [], | 65 | "relationships_as_subject": [], | ||
66 | "replicates_number": "", | 66 | "replicates_number": "", | ||
t | 67 | "resources": [], | t | 67 | "resources": [ |
68 | "size": 0, | 68 | { | ||
69 | "cache_last_updated": null, | ||||
70 | "cache_url": null, | ||||
71 | "created": "2024-10-25T14:17:20.387801", | ||||
72 | "datastore_active": false, | ||||
73 | "description": "QSAR-ready dataset for hERG channel | ||||
74 | blockade.\r\nBinary Endpoint: {0:inactive, 1:active}", | ||||
75 | "format": "CSV", | ||||
76 | "hash": "", | ||||
77 | "id": "ed9f61eb-505f-4e80-a2e2-1b4d173f7e90", | ||||
78 | "last_modified": "2024-10-25T14:17:20.347492", | ||||
79 | "metadata_modified": "2024-10-25T14:17:20.376367", | ||||
80 | "mimetype": null, | ||||
81 | "mimetype_inner": null, | ||||
82 | "name": "hERG_channels_inhibitors_dataset_CDDD.csv", | ||||
83 | "package_id": "40fa2e07-8a2d-46d9-b0ec-3600f7bf391d", | ||||
84 | "position": 0, | ||||
85 | "resource_type": null, | ||||
86 | "size": 48929458, | ||||
87 | "state": "active", | ||||
88 | "url": | ||||
89 | a2e2-1b4d173f7e90/download/herg_channels_inhibitors_dataset_cddd.csv", | ||||
90 | "url_type": "upload" | ||||
91 | } | ||||
92 | ], | ||||
93 | "size": 48929458, | ||||
69 | "state": "draft", | 94 | "state": "draft", | ||
70 | "tags": [ | 95 | "tags": [ | ||
71 | { | 96 | { | ||
72 | "display_name": "cardiotoxicity", | 97 | "display_name": "cardiotoxicity", | ||
73 | "id": "8ba178e0-bd1e-46ad-aa0b-a1e1c430545b", | 98 | "id": "8ba178e0-bd1e-46ad-aa0b-a1e1c430545b", | ||
74 | "name": "cardiotoxicity", | 99 | "name": "cardiotoxicity", | ||
75 | "state": "active", | 100 | "state": "active", | ||
76 | "vocabulary_id": null | 101 | "vocabulary_id": null | ||
77 | }, | 102 | }, | ||
78 | { | 103 | { | ||
79 | "display_name": "hERG", | 104 | "display_name": "hERG", | ||
80 | "id": "27051182-ce02-4ef0-9adb-5813db2acecc", | 105 | "id": "27051182-ce02-4ef0-9adb-5813db2acecc", | ||
81 | "name": "hERG", | 106 | "name": "hERG", | ||
82 | "state": "active", | 107 | "state": "active", | ||
83 | "vocabulary_id": null | 108 | "vocabulary_id": null | ||
84 | } | 109 | } | ||
85 | ], | 110 | ], | ||
86 | "title": "hERG inhibition leading to cardiac toxicity", | 111 | "title": "hERG inhibition leading to cardiac toxicity", | ||
87 | "toxin": [], | 112 | "toxin": [], | ||
88 | "type": "dataset", | 113 | "type": "dataset", | ||
89 | "url": "", | 114 | "url": "", | ||
90 | "version": "0.1" | 115 | "version": "0.1" | ||
91 | } | 116 | } |